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Academic Year 2005-2006
Academic Year 2004-2005
Academic Year 2003-2004
Academic Year 2002-2003

Academic Year 2001-2002
Academic Year 2000-2001

 

Academic Year 2005-2006
 

August 18, 2005
CS 432
4:00pm
Jean-Phillipe Vert
Researcher, Computational Biology Group leader
Ecole des Mines de Paris
"Supervised Inference of Biological Networks"
January 31, 2006
Calit2, Room 3008
2:00pm
 
Przemyslaw Prusinkiewicz
Professor, Computer Science
University of Calgary
"From Genes to Phenotypes: Modeling Multicellular Organisms with L-systems"
March 3, 2006
CS 432
2:00pm

 
Kimmen Sjölander
Assistant Professor, Department of Bioengineering
University of California, Berkeley
"Phylogenomic Analysis of the Human Genome"



Academic Year 2004-2005


November 2, 2004
CS 432
11:00am

 
Matthias Seeger
University of California, Berkeley
"Spare Gaussian Process Methods: Applications to Models with Multiple Gaussian Processes"
December 10, 2004
CS 432
11:00am
 
Naftali Tishby
The Hebrew University, Jerusalem, Israel
"Minimum Information Inference"
February 10, 2005
CS 432
11:00am
Marcella McClure
Montana State University, Bozeman
"Challenges in Bioinformatics: The Viral RNA-Dependent Polymerases. Do they share common ancestry? Can protein contacts of the Polymerase Complex be predicted without structural information?"
February 11, 2005
CS 432
11:00am
Joachim Buhmann
ETH Institute for Computational Science, Zurich, Switzerland
"Statistical Models for Image Segmentation and Clustering in Computer Vision"
April 29, 2005
CS 432
3:30pm
Eric Baum
Author - previously affiliated with UC Berkeley, Caltech, MIT, Princeton, and the NEC Research Institute
"What is Thought?"

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Academic Year 2003-2004

November 10, 2003
CS 432
8:00am
Russ Greiner
University of Alberta
"WebIC: An Effective 'Complete-Web' Recommender System"
February 18, 2004
ICS2 136
3:00pm
Laurent Itti
University of Southern California
"Contribution of Low-Level Saliency to Human Eye
Movements in Dynamic Scenes"
April 1, 2004
CS 432
4:00pm 
Liat Ein-Dor
Weizmann Institute of Science, Israel
"Sorting Points into Neighborhoods (SPIN): A Novel
Data Organization and Visualization Tool"

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Systems Biology Forum
*all talks are held on Tuesdays at 11am, during the Winter Quarter, unless otherwise noted*

January 13,2004
McDonnell Douglas Auditorium
Ross Overbeek
Fellowship for Interpretation of Genomes (FIG)
"The Project to Annotate 1000 Genomes"
January 20, 2004
PSCB 230 
Tom Carew
UC Irvine
"System Biology of Memory"
January 27, 2004
PSCB 230
Pierre Baldi
UC Irvine - IGB
"Modeling the Molecular World"
February 3, 2004
PSCB 230 
Eric Mjolsness
UC Irvine - IGB
"Software Infrastructure for Systems Biology"
February 10, 2004
PSCB 230 
Herbert Sauro
Keck Graduate Institute, Pasadena, CA
"Computational Software Requirements for Systems Biology"
February 17, 2004
PSCB 230
Frances Chance
UC Irvine
"Joys of Noise: The Role of Background Synaptic Input in Cortical Processing"
February 17, 2004
CS 432
3:00pm 
Quaid Morris
University of Toronto
"Automatic Functional Annotation using a Comprehensive
Set of Mouse Gene Expression Profiles"
February 24, 2004
PSCB 230
Tau-Mu Yi
UC Irvine
"Are Biological Networks Scale-Free?"
March 2, 2004
PSCB 230 
Nancy Allbritton
UC Irvine
"Intracellular Signaling Cascades and Cancer"
March 2, 2004
CS 432
4:00pm 
Li M. Fu
University of Florida, Gainesville
"Recent Advances in Microarray-Based Functional Genomics
Data Mining: An Avenue to Biological Discoveries"
March 9, 2004 
PSCB 230
Eric Stanbridge
UC Irvine
"Signaling Network Circuitry in Cancer Progression"
March 16, 2004
(TBA)  
Kolchanov et al.
     

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Academic Year 2002-2003
 

November 20, 2002
3:00pm
Henrik Jönsson
Division of Biology, Caltech
"Developmental modeling with examples in plants" Natural Sciences I, Conference room 1114
October 25, 2002
4:00pm
Sachdev Sidhu, Genentech, Inc.
"Exploring Protein-Protein Interactions with Phage Display"
McDonnell Douglas Auditorium
Note: Anyone interested in meeting with Dr. Sidhu, is invited to contact Greg Weiss at gweiss@uci.edu

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Academic Year 2001-2002
 

TBA Simon Sherman
University of Nebraska Medical Center
"Bioinformatics Inferential Paradigm in Protein Structure Determination and Analysis"
July 22, 2002
1:30pm
Philip M. Long
Genome Institute of Singapore
"Minimum Majority, Boosting and Microarray Data"
CS 432
June 13, 2002
4:00pm
Wolfgang Banzhaf
University of Dortmund
"Genetic Programming"
CS 432
June 14, 2002
2:00pm
James LeBlanc
Ciphergen Biosystems
"ProteinChip® Arrays for the Study of Differential Protein Expression - Methods and Examples"
COM F114 (Tamkin Hall)
June 6, 2002
4:00pm
George Sperling
UC Irvine
"How the Visual System Computes Motion"
CS 432
May 17, 2002
2:00pm
Doug Tobias
UC Irvine
"Applications of Atomistic Simulations in Biophysics" COM F114 (Tamkin Hall)
March 29, 2002 Andre Levchenko
Johns Hopkins University
"Computational and Experimental Study of a Signaling Pathway: Marriage of Genetics, Biochemistry and Modeling"
March 8, 2002
2:00pm
Eric Winfree
Caltech
"Biomolecular Computing with DNA"
COM F114 (Tamkin Hall)
March 1, 2002
11:00am
Xiaole Liu
Stanford University
"Discovery of Transcription Factor Binding Sites Using Computational Statistics"
CS 432
February 28, 2002
11:00am
Nello Cristianini
UC Berkeley
"Advances In Kernel Based Learning Methods And Their Applications"
CS 432
February 15, 2002
2:00pm
Ray Luo
UC Irvine - Department of Molecular Biology & Biochemistry
"Protein folding at atomistic detail: What can we learn for structure prediction?"
COM F114 (Tamkin Hall)
February 8, 2002
2:00pm
Tom Fielder
UC Irvine - Transgenic Mouse Facility, Research & Graduate Studies
"Making and Using Transgenic Mice at UCI"
COM F114 (Tamkin Hall)
January 18, 2002
2:00pm
Hamid Bolouri
Caltech
"Unraveling Developmental Genetic Regulatory Networks"
COM F114 (Tamkin Hall)
January 18, 2002
10:00am
Hamid Bolouri
Caltech
"Computational Aids for Modeling, Analysis, and Predictive Understanding of Cellular Processes"
ICS2 136
January 14, 2002
5:00pm
Albert-Laszlo Barabasi
University of Notre Dame
"The Architecture Of Complexity: From The Topology Of The WWW To The Cell's Protein And Metabolic Network"
Mc Donnell Douglas Auditorium
December 7, 2001
2:00pm
Steven Brenner
UC Berkeley
"Genome Annotation & Protein Structure"
COM F114 (Tamkin Hall)
November 5, 2001
4:15pm
Lee Rosenberg
Princeton University
"Pharmacogenomics: Legitimate Promise versus Irrational Exuberance"
COM F110
November 1, 2001
10:00am
Alberto Apostolico
Purdue University / University of Padova
"Computational Theories of Surprise"
CS 432
August 17, 2001
11:00am
Dr. Jeffery Krichmar
The Neurosciences Institute, La Jolla
"Brain-Based Devices: Studying Behavior and the Nervous System with Devices that Explore a Real World Environment"
Steinhaus Hall 425, (seminar co-hosted with the Department of Ecology & Evolutionary Biology)
July 10, 2001
3:00 - 4:30pm
Alessio Micheli
University of Pisa, Italy
"Processing of Structured Information in Machine Learning: Connectionist Models for QSPR/QSAR and Drug Design"
CS 432
July 10, 2001
11:00 - 12:00pm
Jo Del Rio
The Salk Institute
"Gene Expression Changes in Response to Seizure in the Mouse Brain"
COM F108

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Academic Year 2000-2001
 

May 18, 2001
2:00 - 3:30pm
Hoda Anton-Culver, UC Irvine
"Informatics and Other Challenges in Cancer Research" COM F114
April 27, 2001
2:00 - 3:00pm
Steven Henikoff, HHMI and Fred Hutchinson Cancer Research Center
"Targeted Screening for Induced Mutations"
COM F114
March 9, 2001
2:00 - 3:00pm
Deanna Church, NCBI  
"Genomic Puzzles: Putting Genomes Together"
COM F114
December 15, 2000
2:00pm
Anne Spence, UC Irvine
"Challenges in Human Genetics"
CS 432
November 21, 2000
1:00pm
Argyrios Ziogas, UC Irvine
"Statistical Analysis of Genetic (Family Based) Data"
CS 432

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