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Sequence Analysis Tools

HMMpro: Hidden Markov Model simulator for biological sequence analysis and multiple alignments with graphical interface.
GWAP Genome Wide Automated determination of Primers.
Mutant Design Restriction enzyme / codon optimization for mutant protein design.

High-Throughput Sequencing
HTS High-Throughput Sequencer, data is managed, analyzed and stored with the IGB.

Comparative Genomics

Comparative genomic analysis (detection of homologous chromosomal regions).

DNA Microarrays
Cyber-T: Software and server for analysis of DNA microarray data (differential expression). 
E. coli data set: Highly replicated (x32) E. coli data sets. 

Regulatory Genomics
MotifMap: Software and server for mapping and analyzing regulatory motifs and networks.

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