Software & servers

ChemDB: Compound database and related tools and datasets

SSpro: Protein secondary structure prediction server (3 classes)

SSpro8: Protein secondary structure prediction server (8 classes) 

ACCpro: Solvent accessibility prediction server 

CONpro: Residue contact number prediction server. 

DIpro: Disulphide bridge prediction server.

MUpro: Single amino acid mutation stability prediction server.

DISpro: Disordered region prediction server.

DOMpro: Domain prediction server.

CMAPpro: Contact map prediction server.

CCMAPpro: Coarse contact map prediction server.

CMAP23Dpro: 3D reconstruction from contact map.

3Dpro: 3D structure prediction server.

ICBS: Inter-chain beta sheet database of protein-protein interactions.

HMMpro: Hidden Markov Model simulator for biological sequence analysis, with graphical interface. Available for download.

Cyber-T: DNA microarray gene expression analysis server. Older version available also here.

LineUp: Comparative genomics server.

CloseUp: Comparative genomics server.

PPDB: Poxvirus Proteomics database.

GWAP: Genome wide automated primer finder servers.

HMMpro: Hidden Markov Model simulator for biological sequence analysis, with graphical interface. Available for download.

DSSB: DNA Structure Sequence Browser. Available upon request. Please contact pfbaldi@ics.uci.edu.

GOnet:  Yeast database and visualization tool combining gene (SGD), gene ontology (GO), and gene interaction (GRID) information.

Sigmoid Database: Database for molecular interactions and pathways (Systems Biology).