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Software and Servers
Chemoinformatics | Structural Proteomics | Functional Proteomics | Genomics
DataBases | Systems Biology | Software Search Engine
Structural Proteomics (SCRATCH suite)
- SSpro: Protein secondary structure prediction server (3 classes)
- SSpro8: Protein secondary structure prediction server (8 classes)
- ACCpro: Solvent accessibility prediction server
- CONpro: Residue contact number prediction server
- DIpro: Disulphide bridge prediction server
- MUpro: Single amino acid mutation stability prediction server
- DISpro: Disordered region prediction server
- DOMpro: Domain prediction server
- CMAPpro: Contact map prediction server
- CCMAPpro: Coarse contact map prediction server
- CMAP23Dpro: 3D reconstruction from contact map
- 3Dpro: 3D structure prediction server
- ICBS: Inter-chain beta sheet database of protein-protein interactions
Genomics
- Cyber-T: DNA microarray gene expression analysis server. Older version available also here
- LineUp: Comparative genomics server
- CloseUp: Comparative genomics server
- PPDB: Poxvirus Proteomics database
- GWAP: Genome wide automated primer finder servers
- HMMpro: Hidden Markov Model simulator for biological sequence analysis, with graphical interface. Available for download. Please contact pfbaldi@ics.uci.edu.
- DSSB: DNA Structure Sequence Browser. Available upon request. Please contact pfbaldi@ics.uci.edu.
- GOnet: Yeast database and visualization tool combining gene (SGD), gene ontology (GO), and gene interaction (GRID) information
- Sigmoid Database: Database for molecular interactions and pathways (Systems Biology)
Please see also the IGB Tools page
To license any of these tools, please contact pfbaldi@ics.uci.edu.
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